Research Interests

Sequence analysis

Greedy gene matching for large scale homology detection

Greedy Gene Matching

Homokaryon specific expression

Nuclear-specific expression

Mutations accumulate in an experimental design

SNPs in experimental design

Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level

Discovering distant synteny

Transcriptomics

Homokaryon specific expression

Nuclear-specific expression

Schizophyllum commune has an extensive and functional alternative splicing repertoire

Fungal alternative splicing

The transcriptional regulator c2h2 accelerates mushroom formation in Agaricus bisporus

c2h2 in A. bisporus

Mutations accumulate in an experimental design

SNPs in experimental design

Fungi

Greedy gene matching for large scale homology detection

Greedy Gene Matching

Homokaryon specific expression

Nuclear-specific expression

Schizophyllum commune has an extensive and functional alternative splicing repertoire

Fungal alternative splicing

The transcriptional regulator c2h2 accelerates mushroom formation in Agaricus bisporus

c2h2 in A. bisporus

Mutations accumulate in an experimental design

SNPs in experimental design

Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level

Discovering distant synteny

Conditional random fields for protein function prediction

CRF function prediction

Biological networks

Greedy gene matching for large scale homology detection

Greedy Gene Matching

Conditional random fields for protein function prediction

CRF function prediction

Synteny

Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level

Discovering distant synteny

Alternative splicing

Schizophyllum commune has an extensive and functional alternative splicing repertoire

Fungal alternative splicing

Variant discovery

Mutations accumulate in an experimental design

SNPs in experimental design

Functional prediction

Conditional random fields for protein function prediction

CRF function prediction

Data integration

Conditional random fields for protein function prediction

CRF function prediction

Machine Learning

Conditional random fields for protein function prediction

CRF function prediction