Publications

In Preparation


Conservation of the regulation of a core metabolic pathway across fungal species.
(Authors Unordered/Incomplete) , and T Gehrmann
| Unpublished

Differentiating the expression of a watermarked pathway duplication in an industrial fungus
(Authors Unordered/Incomplete) , and T Gehrmann
| Unpublished

Extreme gender dimorphism and its impact on the genetic diversity of Dicranum scoparium mosses
A Lang , T Gehrmann , and (Authors Unordered/Incomplete)
| Unpublished

Genomic analysis of the Grape vine pathogen Phaeoacremonium in South African vineyards
L Mostert , T Gehrmann , D Vu , and V Robert
| Unpublished

Phyllosticta citricarpa and sister species of global importance to Citrus
V Guarnaccia , T Gehrmann , D Vu , V Robert , E Groenewald , and PW Crous
| Unpublished

Despite strain preservation, RNA Seq data reveals spontaneous mutation accumulation in an experimental design in Schizophyllum commune
T Gehrmann , JF Pelkmans , RA Ohm , LG Lugones , HAB Wösten , T Abeel , and MJT Reinders
| Unpublished

DNA barcoding of CBS filamentous fungi
(Authors Unordered/Incomplete) , D Vu , M de Vries , T Gehrmann , B Stielow , U Eberhardt , E Groenewald , M Groenewald , T Boekhout , PW Crous , V Robert , and GJM Verklij
| Unpublished

Patterns of conservation and diversification in the fungal polarization network
ET Diepeveen , T Gehrmann , V Pourquié , T Abeel , and L Laan
| Unpublished

2018


Nucleus specific expression in the multinucleated mushroom forming fungus Agaricus bisporus reveals different nuclear regulatory programs
T Gehrmann , JF Pelkmans , RA Ohm , AM Vos , LG Lugones , ASM Sonnenberg , JJP Baars , HAB Wösten , MJT Reinders , and T Abeel
| PNAS

2017


Mycobacterium tuberculosis whole genome sequences from Southern India suggest novel resistance mechanisms and the need for region specific diagnostics
AL Manson , T Abeel , JE Galagan , JC Sundaramurthi , Alex Salazar , T Gehrmann , Siva Kumar Shanmugam , Kannan Palaniyandi , S Narayanan , S Swaminathan , and AM Earl
| Clinical Infectious Diseases

Transcription factors of Schizophyllum commune involved in mushroom formation and modulation of vegetative growth
JF Pelkmans , M Patil , T Gehrmann , MJT Reinders , HAB Wösten , and LG Lugones
| Nature Scientific Reports

2016


The transcriptional regulator c2h2 accelerates mushroom formation in Agaricus bisporus
JF Pelkmans , AM Vos , K Scholtmeijer , E Hendrix , JJP Baars , T Gehrmann , MJT Reinders , LG Lugones , and HAB Wösten
| Applied Microbiology and Biotechnology

Schizophyllum commune has an extensive and functional alternative splicing repertoire
T Gehrmann , JF Pelkmans , LG Lugones , HAB Wösten , T Abeel , and MJT Reinders
| Nature Scientific Reports

2015


Proteny, Discovering and visualizing statistically significant syntenic clusters at the proteome level
T Gehrmann , and MJT Reinders
| Bioinformatics

2013


Conditional random fields for protein function prediction
T Gehrmann , M Loog , MJT Reinders , and D de Ridder
| Pattern Recognition in Bioinformatics